Recent publications

Authors: M. Montévil; G. Longo; G. Frezza; D. Ceccarelli
Book Chapter, In Press
Authors: M. Montévil
Journal Article, 2018
Authors: M. Montévil; A. Pocheville
Journal Article, 2017
Authors: G. Longo; M. Montévil
Journal Article, 2017
Authors: M. Montévil
Journal Article, 2017

Maël Montévil's research page

Investigations in theoretical biology

Installation of SAMA


Programs required:

If they are not already installed, install FIJI and R.

WARNING for Microsoft Windows users: it is better to install R and fiji outside Program Files to avoid problems of permissions.

FIJI Plugins required:

  • 3D imageJ suite

As of now, Sama is compatible with version 3.5 and later.

This plugin can be installed by going to help> update fiji. And in the new window going to Manage update sites and activating the 3D ImageJ Suite.

Optional FIJI Plugins:

Installation of Sama

  • Download SAMA:

  • Extract and copy the SAMA folder in the plugins folder of FIJI.
  • (Re)start FIJI.
  • In FIJI , run Plugin>Sama>install or update R component. Then select install in the dialog and hit ok. This process will install the required R packages, including the R SAMA components.
  • Windows only: SAMA will ask you for the path to the R executable. It usually is in /root folder/R/R-x.x.x/bin/. In case of a mistake, it is possible to change this path in SAMA > updateR. Let us recall that R should not be installed in Program files because of issues with permissions.